"Religion is a hypothesis about the world: the hypothesis that things are the way they are, at least in part, because of supernatural entities or forces acting on the natural world. And there's no good reason to treat it any differently from any other hypothesis. Which includes pointing out its flaws and inconsistencies, asking its adherents to back it up with solid evidence, making jokes about it when it's just being silly, offering arguments and evidence for our own competing hypotheses...and trying to persuade people out of it if we think it's mistaken. It's persuasion. It's the marketplace of ideas. Why should religion get a free ride"

Greta Christina

Showing posts with label Creationism. Show all posts
Showing posts with label Creationism. Show all posts

Tuesday, 21 March 2017

On reading "Signature in the Cell"



I was recently prompted to read outside of my methodological naturalist’s bubble and delve into Stephen C Meyer’s argument for intelligent design “Signature in the Cell: DNA and the evidence for Intelligent Design” . As a general principle if you want to argue against the misconceptions people hold it is not always enough to have mere facts at your disposal, it helps also to mine the source of their misunderstanding and the plausible quasi-scientific arguments of the likes of Meyer and Michael Behe are fundamental to those who would argue against naturalist theories of the origin of life.

The first thing to say about Meyer is that he is an extremely well qualified philosopher of science and there is very little in Signature in the Cell insofar as it relates to the actual molecular biology of DNA and its role in protein synthesis that I would argue with. In fact the opening chapters would make quite a good undergraduate primer on the subject. He correctly points out that a modern living cell is an incredibly complex machine of interrelated systems capable of transcribing information from the genetic code held in DNA and translating it into large functionally specific molecules such as proteins. He also, and equally correctly, observes that many of these proteins are necessary for the very processes of translation and transcription that the cell relies on to create them, in particular Ribosomes , the RNA / Protein complex that “stitches” amino acids together to make other proteins.
This interrelatedness and complexity forms one plank of his assertion that naturalistic processes cannot be responsible for the origin of life since even a minimally functional cell could not arise without a DNA code and the code could not be translated without specific decoding machinery. Then for further support he argues that there is no known mechanism by which a specific and information rich system can arise by chance alone. All such other know systems; computer code, written language etcetera have an intelligent source: us.

From these he builds a long and rather repetitive argument using abductive reasoning to draw an inference to the best explanation for the origin of life and specifically the information carried by DNA. He cites a number of statistical reasons why chemical theories of the origin of life are impossible, why chance cannot produce specified information and debunks the RNA world hypothesis as a precursor to a full blown DNA code. By systematically eliminating all possible natural explanations for life he seeks to establish that intelligent design is the only possible alternative. However, many of the assumptions he makes to suggest that a naturalistic origin of life is impossible are in my view flawed.

For example there is no necessity for a “minimally functional cell” to arise in one fell swoop and there is no necessity either for replication and metabolism to arise simultaneously or in the same place. There are credible metabolism first scenarios in which thermodynamically favourable conditions can allow spontaneous simple metabolic cycles to emerge. It has been postulated that alkaline hydrothermal vents would have been one such favourable environment. Meyer also insists there are no fundamental forces of nature driving systems to self-organise and increase in complexity but in the last couple of years Jeremy England at MIT has developed a thermodynamic theory that suggests entropy actually favours organised and replicating structures as they are more efficient at energy dispersal. Combinations of replicators and metabolisers allows for the possibility of some kind of biological bootstrapping.

Meyer makes something of a schoolboy error when he argues that the active sites that confer the catalytic specificity to enzymes are so specific that a single amino acid out of place would render them useless. This is something like the classic anti evolution argument of “what use is half an eye?” The answer of course is more use than none as long as it performs the function to some extent. This is true of enzymes as long as they are more efficient at facilitating a particular chemical reaction than would be the case if they were absent, then natural selection will do the rest. In fact it is not even correct to say that enzymes are so constrained. In his book “The arrival of the Fittest” evolutionary biologist Andreas Wagner concludes that no enzyme is really that special, in fact there are usually an astronomical number of alternatives that work and, interestingly, functional intermediates that allow for enzymes to mutate. He also demonstrates similar functional redundancies in the genetic code itself which added together make the probability of specific information bearing molecules arising randomly much greater than Meyer would have us believe.

It gets worse for Meyer when you consider that as things stand we only have one working model for how life is organised, life on earth. For all we know there could be many ways, with alternative molecules and alternative codes for complex evolving systems to arise. Like a Texas sharpshooter he has drawn a bulls eye around one object out of many and made a miracle out of the fact he’s hit it. Should we ever discover extra-terrestrial life with the same familiar genetic code that would be a real argument against random processes and would bolster the case for intelligent intervention but personally I would bet against it.

A parable that Meyer returns to several times goes like this…
"Imagine a team of researchers who set out to explore a string of remote islands near Antarctica. After many days at sea, they arrive on an icy, windswept shore. Shouldering their packs, the team hikes inland and eventually takes shelter from the bitter cold in a cave. There, by the light of a small campfire built to cook their freeze-dried rations, they notice a curious series of wedgelike markings vaguely reminiscent of Sumerian cuneiform. It occurs to them that perhaps these scratches in the rock constitute some sort of written language, but dating techniques reveal that the markings are more than five hundred thousand years old…"
He concludes that in this situation once all of the other possible natural causes for the information rich markings are exhausted the researchers would reasonably conclude that an intelligent agent was responsible even though the marks predate writing by many millennia. He then equates this with the information rich genetic code and having (he believes) eliminated natural explanations arrives at the same conclusion. But, these two situations are not equivalent. For one thing markings in a cave would show evidence of tool use. The form and disposition of the rock would indicate whether it had been chiselled with bone, stone or metal implements for example and the marks would have had a predetermined meaning. DNA however is both the medium and the message; there are no fingerprints on it to suggest what mechanism was employed by an intelligent designer to forge a molecule that is self-replicating, prone to mutations and contains multiple redundancies in translation. It’s as if the researchers came across rock markings with no evidence of how they were made, which highlights one of the philosophical problems with the whole book. Meyers argument to a best explanation is really no explanation at all. There is no attempt to explain how the designer achieved this feat of molecular engineering, nor why it bothered. Meyer is of course a Christian so for him the answers would be theological, although he is at pains to tell us that intelligent design says nothing about the nature of the designer only that there must be one.

If, as many religiously motivated people are, you were predisposed to distrust naturalistic explanations for the origins of life this book would be convincing. It’s plausible, so if you were not scientifically literate or up to speed with the latest research into biological origins it could easily confirm your preconceptions. But approached sceptically there are many holes and logical non-sequiturs hiding in the narrative particularly in the latter sections where Meyer attempts to defend intelligent design as proper science. But it’s not enough to posit a cause that itself has no explanation. It’s a philosophical dead end unless you can define who or what the intelligent designer was or at least identify a line of enquiry that may expose it. Meyer denies it at length but it’s hard to distinguish “signature in the cell from any other god of the gaps argument.

Tuesday, 11 March 2014

The birds are singing to Yahweh according to Rabbi Sacks.

Oh Dear! Rabbi Lord Jonathan Sacks has fallen into the “Darwin was wrong about some things” trap to deliver a puerile homily about taking ...
...Darwinian selection to be more than a law about biology, and turn it into a metaphor for life itself, as if all that matters is conflict and the struggle to survive, so that love and beauty and even birdsong are robbed of their innocence and reduced to genetic instincts and drives.

Yes, once again Radio 4’s Thought for the Day has come up trumps as an inspiration for a blog post and for me this one touched all the bases; Darwin, evolution, covert creationism and intellectual dishonesty all in one three minute segment. So where to begin?
Well, Lord Sacks has decided that the account of a revised understanding of the sexual mores of birds in a new book The Wisdom of Birds by ornithologist Tim Birkhead is sufficient to impugn the scientific understanding of evolution because it now transpires that Darwin’s assertion that female birds are faithful and monogamous and the promiscuous males sing to attract mates has proved to be less than universally true. It is now recognised that female birds are also opportunistic in their mating strategies and that some species have females that are as vocal as the males as evidenced by genetic studies of wild populations and observation by ornithologists.
The first thing to say about this is that Darwin was wrong about the specifics of many things, most importantly from an evolutionary point of view he completely misunderstood the true nature of inheritance, ignorant as he was of even the Mendelian laws of inheritance being developed around the same time. This is both understandable and widely recognised by biologists who do not see this as a reason to reject what is arguably the most powerful explanatory scientific theory of the millennium. Given that context, minor observational errors on sexual selection in birds should not be a big issue. Although in fact Tim Birkhead says this of Darwin who, as a pigeon fancier, would most likely have been aware of the truth of the matter.
He was probably playing it safe. In Victorian England it simply wasn’t appropriate for a well-respected gentleman scientist to draw attention to the existence of female promiscuity, let alone to justify it in biological terms.
Be that as it may avian female promiscuity and vocalisation does not lead to the conclusions that Lord Sacks would like to infer with this:
A century and a half ago Darwin argued that birdsong was all about sexual selection. It was males who did the singing, hoping to make female birds swoon at hearing the ornithological equivalent of Justin Bieber, giving the most tuneful males a better chance of handing on their genes to the next generation. Well, it turns out to be not quite like that after all, because scientists have now discovered that female birds do almost as much singing as the males, and it has less to do with sexual selection, than with simply saying: I’m here.
and this:
Not all is wrong in a world where birds sing for the joy of being alive.
Birdsong fulfills several functions not, or only partly, related to mating strategies. For some species it is territorial, a signal to deter members of the same species from invading its feeding and breeding grounds. In flocking birds it can be a means of maintaining colony cohesion and for warning against predators. Singing has to be explainable under natural selection as making a noise can be a risky strategy for a prey species and would only persist in a population if it had other survival advantages: saying "I'm here" just for the sake of it could result in "the joy of being alive" a very short experience. Skylarks for example, while on the wing, will use song as a form of defense against predator birds. By singing, the skylark signals that it is in good condition and will be difficult to catch as only a fit skylark can afford to sing whilst being chased by a predator.
Moreover even if both males and females are singing to attract mates it does not negate sexual selection as both sexes would be advertising their fitness to potential partners which is still true even if strict monogamy were not the expected outcome. Lord Sacks seems to be suffering from the delusion that it can only be sexual selection if the male is behaving like a peacock and the female is a coy recipient of his advances which may say more about his cultural biases than about his grasp of biology. After all, both partners will usually be involved in feeding the brood so fitness, for which singing is a proxy, is advantageous to both birds.
Lord Sacks cannot make any of this mean what he would like it to mean which is birds sing because of God.
[…] like all those psalms that speak of creation singing a song to the creator, and the wonderful closing line of the last psalm of all: Let everything that breathes praise the Lord.
Birds sing for survival and not to praise a deity that only human minds can afford the luxury of inventing and no faux pas of Darwin’s changes that. However that does not render the dawn chorus any less uplifting or appealing, in fact the complex twists and turns of natural selection that have granted the birds their vocal abilities are mirrored in our own to appreciate them. Which is a much deeper and richer truth that it may benefit the good Rabbi to contemplate.

Monday, 30 July 2012

The DofE responds on creationist academy

In this post on the approval of more faith based free schools I said
"The groups applying for Free School status are noticeably more evangelical in nature and are unlikely to confine their religious content to the appropriate places in the syllabus. This is especially true in the case of the proposed Exemplar Academy, a rehash of a bid originally made by the Everyday Champions Church that was, quite correctly, rejected by the DoE. So, why Michael Gove should think that a change of name and the removal of the explicit link with the chuch should have actually changed this group’s creationist agenda is beyond my comprehension"
Well it was obviously beyond the comprehension of the BHA too as they launched a letter writing campaign to Michael Gove, in which I happily participated.
Here is the reply received from his office (emphasis mine):
Thank you for your correspondence, addressed to the Secretary of State, expressing disagreement with his decision to support the Exemplar New Business Academy Free School project with its links to the Everyday Champions Church. I hope you will appreciate the Secretary of State for Education receives a vast amount of correspondence and is unable to reply to each one personally. It is for this reason I have been asked to reply.No Free School is allowed to teach creationism. The Free School application guidance published by the Department now specifically says creationism, intelligent design and similar ideas cannot be taught as valid scientific theories.
Furthermore, the funding agreements for all Free Schools state that divine creation should not be taught as an 'evidence-based view or theory' (a scientific theory) in any lesson: so if a school did do this they would be putting their funding at risk. We are confident that the Free School project you mention will follow the rules, having explored these questions robustly with them at interview.
Prior to entering into a funding agreement, the Academy Trust is required to carry out a consultation about their plans to open a Free School. Consultations can be run in a number of ways including surveys, the launch of a simple website, meetings of key individuals and open public meetings. Academy Trusts also need to demonstrate that they have considered the views of their stakeholders. Most do this by publishing a report setting out the key findings of their consultation.
Every application approved has had to demonstrate that the new school will provide a broad and balanced curriculum. Free Schools are subject to Ofsted inspections in the same way as all other state schools, and the government has powers to intervene in a school where there is significant cause for concern.
Please be assured that the Department will be working with the project mentioned over the coming months to ensure that the assurances they have provided us with are honoured.
The rhetoric is encouraging (it is at least a relief to know that the Department of Education understand what a scientific theory is) but they are being very naïve if they think the Exemplar Academy won’t make it very clear to students what they are expected to believe about the theory of evolution. It is very easy to discuss evolution in a biology class in a “this is what scientists think happened” sort of way and even turn out children who correctly answer questions like “What is the scientific explanation for the diversity of life?” But it is equally easy to have the topic discussed in R.E or during assembly in definitive biblical terms, without claiming divine creation to be an evidenced theory.
What Michael Gove and the DofE need to realise is that fundamentalist Christians are intrinsically dishonest; they may well keep to the letter of the law, but they will not honour its spirit. He is expecting this academy’s staff to teach scientific theories, with which they profoundly disagree, in an independent minded and dispassionate way: Not - a - chance.